Zm00001d049980 (GRMZM2G121776)


Aliases : GRMZM2G121776

Description : 27.1.2 RNA.processing.RNA helicase Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. ENHANCED SILENCING PHENOTYPE 3 (ESP3)


Gene families : OG_01_0000259 (Gene family) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d049980
Cluster HCCA cluster: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.06 Gene family
AT3G62310 No alias RNA helicase family protein 0.02 Gene family
Cpa|evm.model.tig00000842.2 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Cpa|evm.model.tig00000984.27 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
Cpa|evm.model.tig00020531.53 No alias 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.01 Gene family
Cre07.g349100 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
Cre08.g358563 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Cre24.g755347 No alias 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.02 Gene family
GSVIVT01007911001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.1 Gene family
GSVIVT01010362001 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
GSVIVT01028153001 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
GSVIVT01029863001 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.1 Gene family
LOC_Os07g32430 Os07g0508000 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.08 Gene family
LOC_Os08g24760 Os08g0335000 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
MA_277016g0010 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.06 Gene family
MA_34468g0010 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
Smo76120 PACid_15413436 No description available 0.02 Gene family
Solyc03g115390.3.1 Solyc03g115390.3 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.08 Gene family
Solyc05g015040.3.1 Solyc05g015040.3 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.04 Gene family
Solyc09g008120.3.1 Solyc09g008120.3 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.04 Gene family
Solyc10g076910.2.1 Solyc10g076910.2 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.11 Gene family

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 415 543
IPR007502 Helicase-assoc_dom 605 677
No external refs found!