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  5. Dcu_g15931

Dcu_g15931


Description : transposon-derived factor HDP1 & original description: none


Gene families : OG0004656 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004656_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g15931

Target Alias Description ECC score Gene Family Method Actions
AT4G27010 No alias CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis... 0.04 OrthoFinder output from all 47 species
Aev_g29407 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17555 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037632001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_10022 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g53380.1 LOC_Os04g53380 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g10461 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
MA_650948g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_84396g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g07950.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc02g065500.4.1 Solyc02g065500 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g11350 No alias transposon-derived factor HDP1 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006881_P003 Zm00001e006881 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021714 Npa1_N 124 457
IPR032436 NopRA1_C 2229 2419
No external refs found!