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  5. Dcu_g15269

Dcu_g15269 (PDF2)


Aliases : PDF2

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g15269
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00265170 PDF2,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT4G04890 PDF2 protodermal factor 2 0.04 OrthoFinder output from all 47 species
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.05 OrthoFinder output from all 47 species
Adi_g057101 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23646 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25555 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05720 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07199 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08452 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57033.t1 ATML1, Aspi01Gene57033 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene69127.t1 PDF2, Aspi01Gene69127 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g03815 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20385 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001986001 HDG2 RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
LOC_Os06g10600.1 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
LOC_Os08g08820.2 PDF2, LOC_Os08g08820 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
LOC_Os09g35760.1 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Lfl_g40594 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_103885g0010 ATML1 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
MA_122121g0010 PDF2 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Mp7g09710.1 ATML1 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Nbi_g13220 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37968 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08965 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922 ATML1 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006777 ATML1 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013927 PDF2 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g12326 No alias HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22671 No alias HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo403927 PDF2 No description available 0.02 OrthoFinder output from all 47 species
Solyc02g080260.4.1 PDF2, Solyc02g080260 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Solyc09g015110.2.1 Solyc09g015110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g16174 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31372 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002453_P001 HDG5, HB-7,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e006870_P004 HDG2, Zm00001e006870 transcription factor (HD-ZIP IV) 0.01 OrthoFinder output from all 47 species
Zm00001e017088_P001 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e019597_P001 PDF2, Zm00001e019597 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e021649_P002 PDF2, Zm00001e021649 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e023786_P003 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e034755_P001 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e036212_P002 EDT1, HDG11,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e039947_P001 HDG2, Zm00001e039947 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Zm00001e040312_P001 PDF2, Zm00001e040312 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e041695_P001 PDF2, Zm00001e041695 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Zm00001e042218_P002 HDG2, Zm00001e042218 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 204 426
IPR001356 Homeobox_dom 23 77
No external refs found!