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  5. Dcu_g15173

Dcu_g15173


Description : plastidial RNA exonuclease & original description: none


Gene families : OG0006778 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006778_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g15173
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Adi_g047735 No alias plastidial RNA exonuclease & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G097800.1 Ceric.01G097800 plastidial RNA exonuclease & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os01g65400.2 LOC_Os01g65400 plastidial exonuclease 0.02 OrthoFinder output from all 47 species
Ore_g40575 No alias plastidial RNA exonuclease & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39074 No alias plastidial RNA exonuclease & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16678 No alias plastidial RNA exonuclease & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019106_P003 Zm00001e019106 plastidial exonuclease 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR020046 5-3_exonucl_a-hlix_arch_N 127 254
IPR020045 DNA_polI_H3TH 284 370
No external refs found!