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  5. Dcu_g14994

Dcu_g14994 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: none


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g14994
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT4G03430 STA1, EMB2770 pre-mRNA splicing factor-related 0.03 OrthoFinder output from all 47 species
Adi_g055878 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ala_g05725 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0035.g025646 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.1Z128700.1 STA1, EMB2770,... component *(PRPF6) of U5 snRNP complex & original... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.19 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre14.g633650 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
GSVIVT01030385001 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
LOC_Os10g35550.1 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Len_g00746 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Mp6g10790.1 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Nbi_g11692 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g19399 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ppi_g32052 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002228 STA1, EMB2770 regulatory protein of poly(A) RNA polymerase activity &... 0.02 OrthoFinder output from all 47 species
Sam_g26501 No alias component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Spa_g01165 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Tin_g02882 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.06 OrthoFinder output from all 47 species
Zm00001e018293_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010491 PRP1_N 97 263
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!