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  5. Dcu_g14679

Dcu_g14679 (ATCAP-C, ATSMC4, SMC3, ATSMC3)


Aliases : ATCAP-C, ATSMC4, SMC3, ATSMC3

Description : component *(CAP-C/SMC4) of condensin I/II complex & original description: none


Gene families : OG0004748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004748_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g14679

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00079920 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.15 OrthoFinder output from all 47 species
AT5G48600 ATCAP-C, ATSMC4,... structural maintenance of chromosome 3 0.02 OrthoFinder output from all 47 species
Adi_g019665 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Ala_g23510 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.13 OrthoFinder output from all 47 species
Als_g16126 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.17 OrthoFinder output from all 47 species
Aop_g09601 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.2 OrthoFinder output from all 47 species
Aspi01Gene04548.t1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.2 OrthoFinder output from all 47 species
Azfi_s0093.g043172 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Cba_g14904 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
Ceric.07G037500.1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.24 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000711.41 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder output from all 47 species
Cre12.g493400 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.11 OrthoFinder output from all 47 species
Dac_g01058 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.14 OrthoFinder output from all 47 species
GSVIVT01011408001 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.17 OrthoFinder output from all 47 species
Gb_03310 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.18 OrthoFinder output from all 47 species
LOC_Os05g41750.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.14 OrthoFinder output from all 47 species
Len_g03914 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.15 OrthoFinder output from all 47 species
Lfl_g38059 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
MA_10325649g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.03 OrthoFinder output from all 47 species
MA_257738g0010 ATCAP-C, ATSMC4,... no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_317249g0010 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.15 OrthoFinder output from all 47 species
MA_7369647g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.16 OrthoFinder output from all 47 species
MA_82161g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.12 OrthoFinder output from all 47 species
Mp5g06430.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.16 OrthoFinder output from all 47 species
Msp_g32088 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.2 OrthoFinder output from all 47 species
Nbi_g09270 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.22 OrthoFinder output from all 47 species
Ppi_g09236 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015991 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Sam_g07968 No alias component *(CAP-C/SMC4) of condensin I/II complex &... 0.16 OrthoFinder output from all 47 species
Solyc02g087980.3.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.12 OrthoFinder output from all 47 species
Spa_g10497 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.11 OrthoFinder output from all 47 species
Tin_g01288 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR010935 SMC_hinge 539 655
IPR003395 RecF/RecN/SMC_N 9 1211
No external refs found!