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  5. Dcu_g14031

Dcu_g14031 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : plastidial transcript stability factor *(HCF152) & original description: none


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g14031
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g09008 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Aob_g05291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16736 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
Dde_g02920 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Ehy_g23058 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Gb_16885 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g31310.1 LOC_Os07g31310 Pentatricopeptide repeat-containing protein At4g17616... 0.03 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
Nbi_g15156 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Smo82002 CRM3, HCF152 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Spa_g16717 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Zm00001e012797_P004 Zm00001e012797 Pentatricopeptide repeat-containing protein At1g03100,... 0.01 OrthoFinder output from all 47 species
Zm00001e020088_P001 CRM3, HCF152,... HCF152 plastidial RNA transcript stability factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 504 550
IPR002885 Pentatricopeptide_repeat 610 657
IPR002885 Pentatricopeptide_repeat 267 314
IPR002885 Pentatricopeptide_repeat 576 605
IPR002885 Pentatricopeptide_repeat 471 499
IPR002885 Pentatricopeptide_repeat 434 459
No external refs found!