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  5. Dcu_g13980

Dcu_g13980 (EMB1270)


Aliases : EMB1270

Description : stability factor *(PPR10) & original description: none


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g13980
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.04 OrthoFinder output from all 47 species
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g24126 No alias stability factor *(PPR10) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02296 No alias stability factor *(PPR10) & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.06 OrthoFinder output from all 47 species
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
Lfl_g02252 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
MA_71865g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
Mp8g08650.1 No alias plastidial mRNA processing factor (PPR10) 0.01 OrthoFinder output from all 47 species
Ppi_g17870 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13568 No alias stability factor *(PPR10) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g107320.3.1 Solyc01g107320 plastidial mRNA processing factor (PPR10) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 554 611
IPR002885 Pentatricopeptide_repeat 412 472
IPR002885 Pentatricopeptide_repeat 307 366
IPR002885 Pentatricopeptide_repeat 236 296
IPR002885 Pentatricopeptide_repeat 669 712
IPR002885 Pentatricopeptide_repeat 493 540
IPR002885 Pentatricopeptide_repeat 738 785
IPR002885 Pentatricopeptide_repeat 806 835
No external refs found!