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  5. Dcu_g13740

Dcu_g13740 (RHM1, ROL1, ATRHM1)


Aliases : RHM1, ROL1, ATRHM1

Description : UDP-L-rhamnose synthase *(RHM) & original description: none


Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g13740

Target Alias Description ECC score Gene Family Method Actions
AT1G53500 ATRHM2, RHM2,... NAD-dependent epimerase/dehydratase family protein 0.03 OrthoFinder output from all 47 species
AT1G78570 RHM1, ROL1, ATRHM1 rhamnose biosynthesis 1 0.03 OrthoFinder output from all 47 species
Aev_g03858 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29693 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01244 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18717 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.13G016100.1 NRS/ER, UER1,... dTDP-rhamnose synthase *(NRS-ER) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.15G004900.1 ATRHM2, RHM2,... UDP-L-rhamnose synthase *(RHM) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g16757 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g04880.1 NRS/ER, UER1 UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005330 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g50767 No alias UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015435_P001 NRS/ER, UER1,... UDP-L-rhamnose synthase 0.02 OrthoFinder output from all 47 species
Zm00001e025412_P001 ATRHM2, RHM2,... Trifunctional UDP-glucose... 0.02 OrthoFinder output from all 47 species
Zm00001e038472_P001 RHM1, ROL1,... UDP-L-rhamnose synthase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 11 316
IPR029903 RmlD-like-bd 386 557
No external refs found!