Zm00001d049605 (GRMZM2G574858)

Aliases : GRMZM2G574858

Description : 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin. DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 (DRD1)

Gene families : OG_01_0001992 (Gene family) Phylogenetic Tree(s): OG0001992_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d049605
Cluster HCCA cluster: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
AT2G16390 DMS1, DRD1, CHR35 SNF2 domain-containing protein / helicase... 0.03 Gene family
LOC_Os06g14440 Os06g0255700 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
Solyc01g109970.3.1 Solyc01g109970.3 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 754 868
IPR000330 SNF2_N 426 602
No external refs found!