Dcu_g13090

Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g13090
Cluster	HCCA: Cluster_171

Target	Alias	Description	ECC score	Gene Family Method
ATCG00800	No alias	structural constituent of ribosome	0.14	OrthoFinder output from all 47 species
Aev_g14422	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Als_g09230	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cba_g05105	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.05G042400.1	Ceric.05G042400	component *(uS3c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ceric.07G056500.1	Ceric.07G056500	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.29G004400.1	Ceric.29G004400	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.29G068400.1	Ceric.29G068400	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.38G009200.1	Ceric.38G009200	component *(uS3c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Gb_15033	No alias	component psRPS3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
LOC_Os04g16824.1	LOC_Os04g16824	component psRPS3 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
LOC_Os09g24416.1	LOC_Os09g24416	component psRPS3 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Lfl_g28864	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Msp_g15785	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g10343	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Pir_g00314	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730	No alias	not classified & original description: CDS=1-393	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Solyc00g500034.1.1	Solyc00g500034	component psRPL22 of large ribosomal subunit proteome....	0.03	OrthoFinder output from all 47 species
Solyc09g050066.1.1	Solyc09g050066	30S ribosomal protein S3, chloroplastic OS=Solanum...	0.02	OrthoFinder output from all 47 species
Zm00001e003906_P001	Zm00001e003906	component psRPS3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e009620_P001	Zm00001e009620	component psRPS3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e011301_P001	Zm00001e011301	component psRPS3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e042087_P001	Zm00001e042087	component psRPS3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	131	213

External Links

No external refs found!

Dcu_g13090

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation