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  5. Dcu_g12725

Dcu_g12725 (FPA)


Aliases : FPA

Description : not classified & original description: none


Gene families : OG0001767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g12725
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Aob_g25752 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Ceric.11G013200.1 FPA, Ceric.11G013200 not classified & original description: pacid=50595357... 0.06 OrthoFinder output from all 47 species
Ceric.17G044800.1 FPA, Ceric.17G044800 not classified & original description: pacid=50618567... 0.04 OrthoFinder output from all 47 species
Ehy_g20663 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18347 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19678 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37666 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e034721_P001 FPA, Zm00001e034721 Flowering time control protein FPA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 275 326
IPR000504 RRM_dom 137 201
IPR000504 RRM_dom 60 124
IPR012921 SPOC_C 579 690
No external refs found!