Zm00001d049494 (GRMZM2G543629)


Aliases : GRMZM2G543629

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme sigma factor A (SIGA)


Gene families : OG_01_0005897 (Gene family) Phylogenetic Tree(s): OG0005897_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d049494
Cluster HCCA cluster: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT1G64860 SIGB, SIG2,... sigma factor A 0.07 Gene family
GSVIVT01024261001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.09 Gene family
LOC_Os08g06630 Os08g0163400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family
MA_10362938g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
MA_10382339g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc03g097320.3.1 Solyc03g097320.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
Solyc06g072710.3.1 Solyc06g072710.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 344 415
IPR007627 RNA_pol_sigma70_r2 268 334
IPR007630 RNA_pol_sigma70_r4 441 490
No external refs found!