Dcu_g11871

Description : ribosome biogenesis factor *(mTERF9)) & original description: none

Gene families : OG0007385 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007385_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g11871
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00088p00159600	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AT5G55580	No alias	Mitochondrial transcription termination factor family protein	0.05	OrthoFinder output from all 47 species
Als_g10518	No alias	ribosome biogenesis factor *(mTERF9)) & original...	0.03	OrthoFinder output from all 47 species
Ceric.31G038100.1	Ceric.31G038100	ribosome biogenesis factor *(mTERF9)) & original...	0.07	OrthoFinder output from all 47 species
GSVIVT01037780001	No alias	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
Mp2g14110.1	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Sam_g06286	No alias	ribosome biogenesis factor *(mTERF9)) & original...	0.03	OrthoFinder output from all 47 species
Solyc12g015640.2.1	Solyc12g015640	transcription factor (mTERF)	0.07	OrthoFinder output from all 47 species
Zm00001e010645_P002	Zm00001e010645	transcription factor (mTERF)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	259	472
IPR003690	MTERF	108	271

External Links

No external refs found!