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  5. Dcu_g11869

Dcu_g11869


Description : mitochondrial RNA splicing factor *(ABO5) & original description: none


Gene families : OG0005617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005617_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11869

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00191420 ABO5,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Adi_g014392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56987 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.05 OrthoFinder output from all 47 species
Aop_g09293 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.06 OrthoFinder output from all 47 species
Cba_g04670 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Ceric.08G062900.1 Ceric.08G062900 mitochondrial RNA splicing factor *(ABO5) & original... 0.09 OrthoFinder output from all 47 species
Dac_g45786 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.05 OrthoFinder output from all 47 species
Dde_g06863 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g24980 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g12116 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g28454 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g13340.1 ABO5, LOC_Os02g13340 ABO5 mitochondrial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_10433402g0010 ABO5 ABO5 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
MA_90107g0010 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.03 OrthoFinder output from all 47 species
Nbi_g07928 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g05269 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g49410 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g56233 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Spa_g04254 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 399 444
IPR002885 Pentatricopeptide_repeat 236 284
IPR002885 Pentatricopeptide_repeat 548 597
IPR002885 Pentatricopeptide_repeat 618 661
IPR002885 Pentatricopeptide_repeat 341 388
IPR002885 Pentatricopeptide_repeat 450 476
IPR002885 Pentatricopeptide_repeat 517 545
IPR002885 Pentatricopeptide_repeat 482 511
IPR002885 Pentatricopeptide_repeat 308 337
No external refs found!