Dcu_g11704


Description : RNA editing factor *(OZ) & original description: none


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11704

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00189360 evm_27.TU.AmTr_v1... Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00060p00085440 evm_27.TU.AmTr_v1... Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G53460 No alias BEST Arabidopsis thaliana protein match is: Ran BP2/NZF... 0.02 OrthoFinder output from all 47 species
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.03 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15963 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.05 OrthoFinder output from all 47 species
Ehy_g02812 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04668 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os03g50430.1 LOC_Os03g50430 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
MA_854125g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Ore_g29092 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00990 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
Spa_g11918 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 460 485
IPR001876 Znf_RanBP2 537 563
IPR001876 Znf_RanBP2 497 523
IPR001876 Znf_RanBP2 577 603
No external refs found!