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  5. Dcu_g11292

Dcu_g11292 (EMB976)


Aliases : EMB976

Description : plastidial splicing factor *(PDM4) & original description: none


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11292

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
Ceric.11G008200.1 EMB976, Ceric.11G008200 plastidial splicing factor *(PDM4) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.05 OrthoFinder output from all 47 species
Gb_15749 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.05 OrthoFinder output from all 47 species
LOC_Os06g02120.1 EMB976, LOC_Os06g02120 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
MA_10434955g0010 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Pir_g07531 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51412 No alias plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g097000.3.1 EMB976, Solyc03g097000 Pentatricopeptide repeat-containing protein At5g27270... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 197 244
IPR002885 Pentatricopeptide_repeat 336 381
IPR002885 Pentatricopeptide_repeat 783 827
IPR002885 Pentatricopeptide_repeat 856 901
IPR002885 Pentatricopeptide_repeat 717 759
IPR002885 Pentatricopeptide_repeat 268 312
IPR002885 Pentatricopeptide_repeat 533 594
IPR002885 Pentatricopeptide_repeat 646 675
IPR002885 Pentatricopeptide_repeat 455 474
IPR002885 Pentatricopeptide_repeat 409 439
IPR002885 Pentatricopeptide_repeat 684 709
IPR002885 Pentatricopeptide_repeat 480 509
No external refs found!