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  5. Dcu_g10522

Dcu_g10522


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10522
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.05 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g098770 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13623.t1 Aspi01Gene13623 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.03 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.03 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
GSVIVT01022794001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027384001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.04 OrthoFinder output from all 47 species
Gb_20750 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g55340.1 LOC_Os03g55340 Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Len_g19159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29766 OTP43 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_69152g0010 MEE40 Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
MA_9740107g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Nbi_g01378 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015082 No alias not classified & original description: CDS=1-1587 0.04 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.02 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e031478_P001 Zm00001e031478 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 158 183
IPR002885 Pentatricopeptide_repeat 123 152
IPR002885 Pentatricopeptide_repeat 333 362
IPR002885 Pentatricopeptide_repeat 474 500
IPR002885 Pentatricopeptide_repeat 259 308
IPR002885 Pentatricopeptide_repeat 574 621
IPR002885 Pentatricopeptide_repeat 644 691
IPR002885 Pentatricopeptide_repeat 504 553
IPR002885 Pentatricopeptide_repeat 364 411
IPR002885 Pentatricopeptide_repeat 430 462
IPR002885 Pentatricopeptide_repeat 221 252
IPR002885 Pentatricopeptide_repeat 710 741
No external refs found!