Zm00001d049160 (GRMZM2G143392)

Aliases : GRMZM2G143392

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. RNApolymerase sigma subunit 2 (SIG2)

Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Zm00001d049160
Cluster	HCCA cluster: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.16	Gene family
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.17	Gene family
AT5G13730	SIGD, SIG4	sigma factor 4	0.03	Gene family
GSVIVT01019326001	No alias	27.3.85 RNA.regulation of transcription.sigma like plant...	0.13	Gene family
GSVIVT01025717001	No alias	No description available	0.09	Gene family
GSVIVT01032193001	No alias	27.3.85 RNA.regulation of transcription.sigma like plant...	0.03	Gene family
GSVIVT01035330001	No alias	27.3.85 RNA.regulation of transcription.sigma like plant...	0.03	Gene family
LOC_Os03g16430	Os03g0271100	27.3.85 RNA.regulation of transcription.sigma like plant...	0.03	Gene family
LOC_Os08g14450	Os08g0242800,...	No description available	0.02	Gene family
LOC_Os11g26160	Os11g0448400	27.3.85 RNA.regulation of transcription.sigma like plant...	0.15	Gene family
MA_10429585g0010	No alias	27.3.85 RNA.regulation of transcription.sigma like plant...	0.06	Gene family
Smo117159	PACid_15403291	27.3.85 RNA.regulation of transcription.sigma like plant...	0.06	Gene family
Solyc01g081490.3.1	Solyc01g081490.3	27.3.85 RNA.regulation of transcription.sigma like plant...	0.17	Gene family
Solyc01g087690.2.1	Solyc01g087690.2	27.3.85 RNA.regulation of transcription.sigma like plant...	0.04	Gene family
Solyc08g065970.3.1	Solyc08g065970.3	27.3.85 RNA.regulation of transcription.sigma like plant...	0.03	Gene family
Solyc09g008040.3.1	Solyc09g008040.3	No description available	0.09	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	InterProScan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007630	RNA_pol_sigma70_r4	469	521
IPR007627	RNA_pol_sigma70_r2	303	370
IPR007624	RNA_pol_sigma70_r3	381	456

External Links

No external refs found!

Zm00001d049160 (GRMZM2G143392)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation