Dcu_g09538


Description : arabinogalactan protein *(Xylogen) & original description: none


Gene families : OG0000195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g09538
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00120480 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 OrthoFinder output from all 47 species
AT1G73550 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT1G73890 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT2G27130 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT2G48140 EDA4 Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT3G58550 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
Ala_g04739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0803.g087563 No alias arabinogalactan protein *(Xylogen) & original... 0.03 OrthoFinder output from all 47 species
Dac_g14616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06089 LTPG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02455 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
LOC_Os03g58940.1 LOC_Os03g58940 xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
LOC_Os05g41030.1 LOC_Os05g41030 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
LOC_Os07g07920.1 EDA4, LOC_Os07g07920 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g31013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_5581g0010 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
MA_72349g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g18180.1 No alias xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Ore_g06115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014611 No alias arabinogalactan protein *(Xylogen) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0169.g024331 No alias not classified & original description: CDS=1491-1979 0.03 OrthoFinder output from all 47 species
Solyc01g073680.4.1 Solyc01g073680 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Solyc06g054070.3.1 Solyc06g054070 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Solyc09g082290.3.1 Solyc09g082290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc09g082300.3.1 EDA4, Solyc09g082300 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g13589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028880_P001 Zm00001e028880 xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 23 111
No external refs found!