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  5. Dcu_g08997

Dcu_g08997 (CTS, ACN2, PED3, AtABCD1, PXA1)


Aliases : CTS, ACN2, PED3, AtABCD1, PXA1

Description : subfamily ABCD transporter & original description: none


Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08997

Target Alias Description ECC score Gene Family Method Actions
AT4G39850 CTS, ACN2, PED3,... peroxisomal ABC transporter 1 0.06 OrthoFinder output from all 47 species
Adi_g020091 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g11144 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g06403 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30641 CTS, ACN2, PED3,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g56890 CTS, ACN2, PED3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G050100.1 CTS, ACN2, PED3,... subfamily ABCD transporter & original description:... 0.04 OrthoFinder output from all 47 species
Len_g16771 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02451 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.05 OrthoFinder output from all 47 species
MA_10427189g0010 CTS, ACN2, PED3,... ABC transporter D family member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10435403g0010 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.05 OrthoFinder output from all 47 species
MA_10437109g0030 CTS, ACN2, PED3,... subfamily ABCD transporter 0.03 OrthoFinder output from all 47 species
MA_526197g0010 CTS, ACN2, PED3,... ABC transporter D family member 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Nbi_g06821 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05350 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36184 No alias subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g055120.3.1 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.03 OrthoFinder output from all 47 species
Zm00001e018534_P001 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 465 610
IPR011527 ABC1_TM_dom 749 1015
IPR011527 ABC1_TM_dom 92 360
IPR003439 ABC_transporter-like_ATP-bd 1131 1297
No external refs found!