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  5. Dcu_g08923

Dcu_g08923


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08923

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00093260 SLO1,... Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00248070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Aev_g44555 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32056 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07235 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07259 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26977 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27311 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27896 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000446 No alias not classified & original description: CDS=1-2970 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008781 No alias not classified & original description: CDS=1-2346 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011259 No alias not classified & original description: CDS=1-2301 0.04 OrthoFinder output from all 47 species
Azfi_s0055.g033972 OTP84 not classified & original description: CDS=1-2028 0.04 OrthoFinder output from all 47 species
Azfi_s0104.g044768 EMB2758 not classified & original description: CDS=1-1815 0.04 OrthoFinder output from all 47 species
Azfi_s0113.g045914 No alias not classified & original description: CDS=1-2748 0.03 OrthoFinder output from all 47 species
Azfi_s0128.g048778 No alias not classified & original description: CDS=1-2676 0.03 OrthoFinder output from all 47 species
Azfi_s0194.g057201 No alias not classified & original description: CDS=1-3408 0.04 OrthoFinder output from all 47 species
Azfi_s0283.g063072 No alias not classified & original description: CDS=1-2475 0.03 OrthoFinder output from all 47 species
Azfi_s0444.g070606 No alias not classified & original description: CDS=1-2982 0.04 OrthoFinder output from all 47 species
Azfi_s0658.g081282 No alias not classified & original description: CDS=13-2166 0.04 OrthoFinder output from all 47 species
Cba_g03367 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04726 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06540 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29689 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g29847 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34536 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g09139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08313 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08400 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g15280 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g39841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
Len_g19878 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06094 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06232 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g07311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32911 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427854g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Ore_g01896 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000052 EMB2758 not classified & original description: CDS=1-1683 0.03 OrthoFinder output from all 47 species
Smo79732 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 355 377
IPR002885 Pentatricopeptide_repeat 181 211
IPR002885 Pentatricopeptide_repeat 557 581
IPR002885 Pentatricopeptide_repeat 383 413
IPR002885 Pentatricopeptide_repeat 484 514
IPR002885 Pentatricopeptide_repeat 456 478
IPR002885 Pentatricopeptide_repeat 254 278
IPR002885 Pentatricopeptide_repeat 282 312
IPR002885 Pentatricopeptide_repeat 153 176
IPR002885 Pentatricopeptide_repeat 585 615
IPR002885 Pentatricopeptide_repeat 80 110
IPR002885 Pentatricopeptide_repeat 650 681
IPR046848 E_motif 700 762
No external refs found!