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  5. Dcu_g08296

Dcu_g08296 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation & original description: none


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08296
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT1G66040 ORTH4, VIM4 Zinc finger (C3HC4-type RING finger) family protein 0.05 OrthoFinder output from all 47 species
LOC_Os05g01230.1 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g26667 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 12 56
IPR027370 Znf-RING_euk 497 528
IPR003105 SRA_YDG 264 412
No external refs found!