1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g08278

Dcu_g08278 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation & original description: none


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08278

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00085910 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Ceric.02G085800.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.15 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g163850 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_06456 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_19211 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g03522 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.1 OrthoFinder output from all 47 species
Len_g53933 VIM5, ORTH3 not classified & original description: none 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000260 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Sam_g40416 No alias regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.05 OrthoFinder output from all 47 species
Smo109372 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Smo51852 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Spa_g11254 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Zm00001e027679_P001 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Zm00001e029714_P002 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR027370 Znf-RING_euk 503 536
IPR003105 SRA_YDG 269 417
IPR019787 Znf_PHD-finger 11 58
No external refs found!