Aev_g25423 (ISE2, PDE317, EMB25)

Aliases : ISE2, PDE317, EMB25

Description : group-II intron splicing RNA helicase *(ISE2) & original description: none

Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g25423
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00090p00178540	ISE2, PDE317,...	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
AT1G70070	ISE2, PDE317, EMB25	DEAD/DEAH box helicase, putative	0.02	OrthoFinder output from all 47 species
Cba_g14553	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Ceric.18G021200.1	ISE2, PDE317,...	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species
Gb_35993	ISE2, PDE317, EMB25	RNA helicase (ISE2)	0.03	OrthoFinder output from all 47 species
MA_10437000g0020	ISE2, PDE317, EMB25	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic...	0.04	OrthoFinder output from all 47 species
MA_1283g0010	ISE2, PDE317, EMB25	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic...	0.03	OrthoFinder output from all 47 species
Mp4g01470.1	ISE2, PDE317, EMB25	RNA helicase (ISE2)	0.02	OrthoFinder output from all 47 species
Nbi_g18791	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Ppi_g08266	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species
Sam_g07224	No alias	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	250	403
IPR012961	Ski2/MTR4_C	1091	1257

External Links

No external refs found!