Aliases : SVR1
Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: none
Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G39140 | SVR1 | pseudouridine synthase family protein | 0.04 | OrthoFinder output from all 47 species | |
Ceric.20G017700.1 | SVR1, Ceric.20G017700 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.07 | OrthoFinder output from all 47 species | |
Cre07.g323550 | No alias | RNA processing.RNA... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g05806.1 | SVR1, LOC_Os03g05806 | rRNA pseudouridine synthase (RsuA) | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g16475 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Mp1g28730.1 | SVR1 | rRNA pseudouridine synthase (RsuA) | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0123.g021502 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g12462 | No alias | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g49457 | No alias | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.03 | OrthoFinder output from all 47 species | |
Solyc11g008360.3.1 | SVR1, Solyc11g008360 | rRNA pseudouridine synthase (RsuA) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e000423_P001 | SVR1, Zm00001e000423 | rRNA pseudouridine synthase (RsuA) | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
MF | GO:0070569 | uridylyltransferase activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
No external refs found! |