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  5. Dcu_g06516

Dcu_g06516 (SPA4)


Aliases : SPA4

Description : regulatory component *(SPA) of COP1-SPA light signal transduction E3 ubiquitin ligase complex & original description: none


Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g06516
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT2G32950 FUS1, EMB168,... Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G11110 SPA2 SPA1-related 2 0.02 OrthoFinder output from all 47 species
Ala_g09701 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Als_g24085 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Aop_g39226 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008529 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Cba_g04733 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Cba_g15102 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.05 OrthoFinder output from all 47 species
GSVIVT01007271001 FUS1, EMB168,... External stimuli response.light.red/far red... 0.03 OrthoFinder output from all 47 species
GSVIVT01027054001 SPA1 External stimuli response.light.red/far red... 0.03 OrthoFinder output from all 47 species
LOC_Os05g49590.1 SPA1, LOC_Os05g49590 protein kinase (PEK). regulator component SPA of... 0.03 OrthoFinder output from all 47 species
Len_g02398 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.05 OrthoFinder output from all 47 species
Len_g48626 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Lfl_g04186 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Lfl_g16193 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Mp3g25460.1 SPA3 protein kinase (PEK). regulator component SPA of... 0.02 OrthoFinder output from all 47 species
Nbi_g06333 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Ppi_g49237 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Sam_g39705 No alias component *(COP1) of COP1-SPA light signal transduction... 0.04 OrthoFinder output from all 47 species
Smo141846 FUS1, EMB168,... External stimuli response.light.red/far red... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1016 1047
IPR001680 WD40_repeat 929 962
No external refs found!