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Description : not classified & original description: none
Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Dcu_g06462 | |
| Cluster | HCCA: Cluster_59 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00065p00020910 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g30825,... | 0.04 | OrthoFinder output from all 47 species | |
| AT4G30825 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g016371 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g032212 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g04893 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g14519 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g21865 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g12627 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g03993 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01014050001 | No alias | Pentatricopeptide repeat-containing protein At4g30825,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_06104 | No alias | Pentatricopeptide repeat-containing protein At4g30825,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g25550.1 | LOC_Os09g25550 | Pentatricopeptide repeat-containing protein At4g30825,... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g12313 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g20786 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_187850g0010 | No alias | Pentatricopeptide repeat-containing protein At4g30825,... | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g36090 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012097 | No alias | not classified & original description: CDS=661-1995 | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0063.g015623 | No alias | not classified & original description: CDS=1-2238 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0149.g023267 | No alias | not classified & original description: CDS=111-2933 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13761 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Spa_g52939 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e040095_P002 | Zm00001e040095 | Pentatricopeptide repeat-containing protein At4g30825,... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0004497 | monooxygenase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005506 | iron ion binding | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006536 | glutamate metabolic process | IEP | HCCA |
| BP | GO:0006537 | glutamate biosynthetic process | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | HCCA |
| MF | GO:0015930 | glutamate synthase activity | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | HCCA |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0051213 | dioxygenase activity | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 766 | 796 |
| IPR002885 | Pentatricopeptide_repeat | 348 | 376 |
| IPR002885 | Pentatricopeptide_repeat | 387 | 411 |
| IPR002885 | Pentatricopeptide_repeat | 594 | 619 |
| IPR002885 | Pentatricopeptide_repeat | 413 | 460 |
| IPR002885 | Pentatricopeptide_repeat | 902 | 949 |
| IPR002885 | Pentatricopeptide_repeat | 476 | 530 |
| IPR002885 | Pentatricopeptide_repeat | 822 | 882 |
| IPR002885 | Pentatricopeptide_repeat | 646 | 706 |
| IPR002885 | Pentatricopeptide_repeat | 279 | 321 |
| No external refs found! |