Aliases : VIP4
Description : component *(VIP4/LEO1) of PAF1C transcription initiation and elongation complex & original description: none
Gene families : OG0004350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004350_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g075389 | VIP4 | component *(VIP4/LEO1) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02355 | VIP4 | component *(VIP4/LEO1) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g14527 | VIP4 | component *(VIP4/LEO1) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020918.2 | VIP4 | RNA biosynthesis.RNA polymerase II-dependent... | 0.01 | OrthoFinder output from all 47 species | |
Cre16.g694204 | VIP4 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01007883001 | VIP4 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os07g01880.1 | VIP4, LOC_Os07g01880 | component VIP4/LEO1 of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g04886 | VIP4 | component *(VIP4/LEO1) of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g37591 | VIP4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g10480 | VIP4 | component *(VIP4/LEO1) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g19588 | No alias | component *(VIP4/LEO1) of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e011566_P001 | VIP4, Zm00001e011566 | component VIP4/LEO1 of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032701_P001 | VIP4, Zm00001e032701 | component VIP4/LEO1 of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006368 | transcription elongation by RNA polymerase II | IEA | Interproscan |
BP | GO:0016570 | histone modification | IEA | Interproscan |
CC | GO:0016593 | Cdc73/Paf1 complex | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007149 | Leo1 | 258 | 417 |
No external refs found! |