Dcu_g06383 (VIP4)


Aliases : VIP4

Description : component *(VIP4/LEO1) of PAF1C transcription initiation and elongation complex & original description: none


Gene families : OG0004350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004350_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g06383

Target Alias Description ECC score Gene Family Method Actions
Adi_g075389 VIP4 component *(VIP4/LEO1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ala_g02355 VIP4 component *(VIP4/LEO1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Aop_g14527 VIP4 component *(VIP4/LEO1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020918.2 VIP4 RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Cre16.g694204 VIP4 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01007883001 VIP4 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
LOC_Os07g01880.1 VIP4, LOC_Os07g01880 component VIP4/LEO1 of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Lfl_g04886 VIP4 component *(VIP4/LEO1) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Ore_g37591 VIP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10480 VIP4 component *(VIP4/LEO1) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Sam_g19588 No alias component *(VIP4/LEO1) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Zm00001e011566_P001 VIP4, Zm00001e011566 component VIP4/LEO1 of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Zm00001e032701_P001 VIP4, Zm00001e032701 component VIP4/LEO1 of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006368 transcription elongation by RNA polymerase II IEA Interproscan
BP GO:0016570 histone modification IEA Interproscan
CC GO:0016593 Cdc73/Paf1 complex IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007149 Leo1 258 417
No external refs found!