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  5. Dcu_g05755

Dcu_g05755 (PTAC2)


Aliases : PTAC2

Description : cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2) & original description: none


Gene families : OG0008467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008467_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05755

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 PTAC2,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AT1G74850 PTAC2 plastid transcriptionally active 2 0.06 OrthoFinder output from all 47 species
Ala_g08004 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
Als_g01158 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Ceric.39G041000.1 PTAC2, Ceric.39G041000 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
GSVIVT01007844001 PTAC2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
MA_140582g0010 PTAC2 Pentatricopeptide repeat-containing protein At1g74850,... 0.02 OrthoFinder output from all 47 species
Mp7g11380.1 PTAC2 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Msp_g11314 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Nbi_g06808 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023343 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
Solyc03g113630.3.1 PTAC2, Solyc03g113630 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Tin_g27885 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 422
IPR002885 Pentatricopeptide_repeat 568 597
IPR002885 Pentatricopeptide_repeat 673 700
IPR002885 Pentatricopeptide_repeat 424 471
IPR002885 Pentatricopeptide_repeat 601 647
IPR002885 Pentatricopeptide_repeat 237 296
IPR002885 Pentatricopeptide_repeat 308 367
IPR002885 Pentatricopeptide_repeat 482 543
No external refs found!