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  5. Dcu_g05184

Dcu_g05184


Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT2G18020 EMB2296 Ribosomal protein L2 family 0.08 OrthoFinder output from all 47 species
AT4G36130 No alias Ribosomal protein L2 family 0.06 OrthoFinder output from all 47 species
Adi_g047038 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ala_g12035 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g43864 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g63414 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12168 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aspi01Gene06611.t1 Aspi01Gene06611 component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene42112.t1 Aspi01Gene42112 component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020965.22 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Cre12.g535851 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g02131 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dde_g26161 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g07391 EMB2296 component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01014552001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
LOC_Os12g38000.1 LOC_Os12g38000 component RPL8 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Lfl_g08739 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10431163g0010 No alias component RPL8 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_17500g0010 EMB2296 60S ribosomal protein L8 OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Mp7g01860.1 EMB2296 component RPL8 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Mp7g08730.1 EMB2296 component RPL8 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Msp_g07633 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c12_10200V3.1 EMB2296, Pp3c12_10200 Ribosomal protein L2 family 0.02 OrthoFinder output from all 47 species
Pp3c13_23630V3.1 EMB2296, Pp3c13_23630 Ribosomal protein L2 family 0.04 OrthoFinder output from all 47 species
Pp3c4_12690V3.1 EMB2296, Pp3c4_12690 Ribosomal protein L2 family 0.08 OrthoFinder output from all 47 species
Pp3c4_12720V3.1 EMB2296, Pp3c4_12720 Ribosomal protein L2 family 0.08 OrthoFinder output from all 47 species
Sam_g13695 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g13696 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Smo170971 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Solyc07g063890.2.1 Solyc07g063890 component RPL8 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Solyc12g005330.2.1 Solyc12g005330 component RPL8 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Spa_g30832 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g39107 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g52209 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g00494 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e002931_P001 EMB2296, Zm00001e002931 component RPL8 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e018178_P001 EMB2296, Zm00001e018178 component RPL8 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e033350_P001 EMB2296, Zm00001e033350 component RPL8 of LSU proteome component 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 14 90
IPR022669 Ribosomal_L2_C 98 225
No external refs found!