Dcu_g04880


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g04880

Target Alias Description ECC score Gene Family Method Actions
Adi_g040822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g083877 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g083878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0007.g010769 No alias not classified & original description: CDS=270-1544 0.02 OrthoFinder output from all 47 species
Azfi_s0226.g058986 No alias not classified & original description: CDS=214-2052 0.02 OrthoFinder output from all 47 species
Azfi_s1420.g102857 No alias not classified & original description: CDS=709-1824 0.04 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.05 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.05 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.05 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.03 OrthoFinder output from all 47 species
Ceric.39G011900.1 Ceric.39G011900 not classified & original description: pacid=50583491... 0.04 OrthoFinder output from all 47 species
Dac_g12970 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g14857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022126001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g07743 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g12133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g05678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g13102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g16749 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g48472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g08627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 75
IPR000504 RRM_dom 529 583
IPR000504 RRM_dom 269 325
IPR000504 RRM_dom 98 158
No external refs found!