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  5. Dcu_g04209

Dcu_g04209


Description : component *(uS12) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g04209
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00204160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
AT5G02960 No alias Ribosomal protein S12/S23 family protein 0.22 OrthoFinder output from all 47 species
Adi_g018843 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g052909 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Adi_g052910 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Adi_g087932 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aev_g03591 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g11128 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aob_g02579 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g02373 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene08506.t1 Aspi01Gene08506 component *(uS12) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s4142.g118106 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Cba_g10602 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g38135 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.02G071000.1 Ceric.02G071000 component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.07G004900.1 Ceric.07G004900 component *(uS12) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.19G078000.1 Ceric.19G078000 component *(uS12) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.27 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from all 47 species
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder output from all 47 species
Ehy_g01986 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ehy_g08120 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01016341001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
GSVIVT01025120001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
GSVIVT01025626001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Gb_02361 No alias component RPS23 of SSU proteome 0.08 OrthoFinder output from all 47 species
Gb_36570 No alias component RPS23 of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os01g61814.1 LOC_Os01g61814 component RPS23 of SSU proteome 0.22 OrthoFinder output from all 47 species
LOC_Os03g60400.1 LOC_Os03g60400 component RPS23 of SSU proteome 0.21 OrthoFinder output from all 47 species
Len_g17887 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Lfl_g14177 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g21912 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10436470g0020 No alias component RPS23 of SSU proteome 0.16 OrthoFinder output from all 47 species
MA_19871g0020 No alias component RPS23 of SSU proteome 0.05 OrthoFinder output from all 47 species
MA_9043057g0010 No alias component RPS23 of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.21 OrthoFinder output from all 47 species
Msp_g12711 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Msp_g40932 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pir_g06535 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pp3c11_11070V3.1 Pp3c11_11070 Ribosomal protein S12/S23 family protein 0.1 OrthoFinder output from all 47 species
Pp3c4_3120V3.1 Pp3c4_3120 Ribosomal protein S12/S23 family protein 0.17 OrthoFinder output from all 47 species
Pp3c7_14200V3.1 Pp3c7_14200 Ribosomal protein S12/S23 family protein 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013622 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g15614 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g19536 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g19537 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g23987 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Smo145246 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Solyc09g007350.3.1 Solyc09g007350 component RPS23 of SSU proteome 0.21 OrthoFinder output from all 47 species
Solyc10g084310.2.1 Solyc10g084310 component RPS23 of SSU proteome 0.18 OrthoFinder output from all 47 species
Solyc10g086020.3.1 Solyc10g086020 component RPS23 of SSU proteome 0.2 OrthoFinder output from all 47 species
Tin_g03594 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Tin_g26329 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Zm00001e006170_P001 Zm00001e006170 component RPS23 of SSU proteome 0.16 OrthoFinder output from all 47 species
Zm00001e011770_P001 Zm00001e011770 component RPS23 of SSU proteome 0.14 OrthoFinder output from all 47 species
Zm00001e019377_P001 Zm00001e019377 component RPS23 of SSU proteome 0.22 OrthoFinder output from all 47 species
Zm00001e027265_P001 Zm00001e027265 component RPS23 of SSU proteome 0.18 OrthoFinder output from all 47 species
Zm00001e031855_P001 Zm00001e031855 component RPS23 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 30 141
No external refs found!