Description : component *(SF3B1) of splicing factor 3B complex & original description: none
Gene families : OG0002634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002634_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G64270 | No alias | splicing factor, putative | 0.02 | OrthoFinder output from all 47 species | |
Ala_g02669 | No alias | component *(SF3B1) of splicing factor 3B complex &... | 0.05 | OrthoFinder output from all 47 species | |
Als_g58968 | No alias | component *(SF3B1) of splicing factor 3B complex &... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.02G008400.1 | Ceric.02G008400 | component *(SF3B1) of splicing factor 3B complex &... | 0.1 | OrthoFinder output from all 47 species | |
Cre12.g494100 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g02908 | No alias | component *(SF3B1) of splicing factor 3B complex &... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01025852001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
Gb_12533 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
Gb_20157 | No alias | component SF3B1 of splicing factor 3B complex | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g05310.4 | LOC_Os02g05310 | component SF3B1 of splicing factor 3B complex | 0.06 | OrthoFinder output from all 47 species | |
Mp5g19650.1 | No alias | component SF3B1 of splicing factor 3B complex | 0.02 | OrthoFinder output from all 47 species | |
Pir_g13624 | No alias | component *(SF3B1) of splicing factor 3B complex &... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g25156 | No alias | component *(SF3B1) of splicing factor 3B complex &... | 0.04 | OrthoFinder output from all 47 species | |
Smo97336 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g02906 | No alias | component *(SF3B1) of splicing factor 3B complex &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e025224_P001 | Zm00001e025224 | component SF3B1 of splicing factor 3B complex | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009314 | response to radiation | IEP | HCCA |
BP | GO:0009411 | response to UV | IEP | HCCA |
BP | GO:0009416 | response to light stimulus | IEP | HCCA |
BP | GO:0009628 | response to abiotic stimulus | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR015016 | SF3b_su1 | 291 | 421 |
No external refs found! |