Dcu_g04126

Description : not classified & original description: none

Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g04126

Target	Alias	Description	ECC score	Gene Family Method
AT3G02060	No alias	DEAD/DEAH box helicase, putative	0.03	OrthoFinder output from all 47 species
Ala_g17279	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g18567	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.13G022800.1	Ceric.13G022800	not classified & original description: pacid=50636376...	0.02	OrthoFinder output from all 47 species
LOC_Os11g32880.1	LOC_Os11g32880	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.04	OrthoFinder output from all 47 species
Len_g28141	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g07230.1	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.03	OrthoFinder output from all 47 species
Msp_g14110	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g30043	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439	No alias	not classified & original description: CDS=315-2762	0.03	OrthoFinder output from all 47 species
Sam_g42734	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Solyc02g094590.3.1	Solyc02g094590	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.03	OrthoFinder output from all 47 species
Zm00001e011170_P004	Zm00001e011170	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003711	CarD-like/TRCF_RID	231	331
IPR001650	Helicase_C	562	666
IPR011545	DEAD/DEAH_box_helicase_dom	362	519

External Links

No external refs found!

Dcu_g04126

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation