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  5. Dcu_g04117

Dcu_g04117 (SDE1, RDR6, SGS2)


Aliases : SDE1, RDR6, SGS2

Description : ssRNA polymerase *(RDR6) & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g04117

Target Alias Description ECC score Gene Family Method Actions
Adi_g008879 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g114067 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33595 SDE1, RDR6, SGS2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g39991 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G029700.1 SDE1, RDR6,... ssRNA polymerase *(RDR6) & original description:... 0.04 OrthoFinder output from all 47 species
Msp_g16228 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48577 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06684 SMD1, RDR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 413 988
No external refs found!