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  5. Dcu_g04026

Dcu_g04026


Description : scaffold component *(Nop58) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0004943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g04026

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260990 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 OrthoFinder output from all 47 species
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 OrthoFinder output from all 47 species
Adi_g081321 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aop_g13968 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029768 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Cba_g02668 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Ceric.24G002900.1 Ceric.24G002900 scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Ceric.30G067400.1 Ceric.30G067400 scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Dac_g17149 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Dde_g01696 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
GSVIVT01021905001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Gb_26926 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
LOC_Os03g22740.1 LOC_Os03g22740 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Lfl_g06618 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.06 OrthoFinder output from all 47 species
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.06 OrthoFinder output from all 47 species
Msp_g14051 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Solyc09g083080.4.1 Solyc09g083080 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species
Spa_g15033 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Zm00001e038207_P001 Zm00001e038207 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002687 Nop_dom 166 394
IPR012974 NOP58/56_N 2 65
No external refs found!