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  5. Dcu_g02950

Dcu_g02950


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g02950

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00125480 KAN2,... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AT4G04555 No alias No description available 0.02 OrthoFinder output from all 47 species
Adi_g025722 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Adi_g125803 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aev_g10098 PHL1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g07061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12175 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g22007 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g01648 No alias GARP subgroup PHL transcription factor & original... 0.06 OrthoFinder output from all 47 species
Aob_g01763 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g04252 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g15949 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g37611 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32964.t1 Aspi01Gene32964 GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g14300 KAN, KAN1 KANADI-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17095 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g26945 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G023400.1 Ceric.02G023400 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G090700.1 Ceric.10G090700 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G067100.1 Ceric.31G067100 GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g27743 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13802 PHL1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g26213 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ehy_g31338 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01015900001 APL, WDY RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
LOC_Os02g04640.1 LOC_Os02g04640 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os02g45080.1 LOC_Os02g45080 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os06g49040.1 LOC_Os06g49040 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Len_g59713 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
MA_10288263g0010 No alias Myb family transcription factor PHL7 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8183372g0010 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Nbi_g02075 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g09762 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g26114 PHL1 transcription factor *(PHR1) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_10900V3.1 Pp3c12_10900 Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016001 No alias not classified & original description: CDS=379-1050 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017585 No alias not classified & original description: CDS=1499-2212 0.03 OrthoFinder output from all 47 species
Solyc09g072830.4.1 PHL1, Solyc09g072830 PHR1 transcription factor involved in proline synthesis... 0.02 OrthoFinder output from all 47 species
Spa_g04247 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g22319 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Tin_g15462 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Zm00001e001526_P001 Zm00001e001526 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e003093_P001 KAN4, ATS, Zm00001e003093 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e004300_P003 Zm00001e004300 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e014339_P001 Zm00001e014339 Putative Myb family transcription factor At1g14600... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 201 247
IPR001005 SANT/Myb 111 161
No external refs found!