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  5. Dcu_g02420

Dcu_g02420 (VAMP727, ATVAMP727)


Aliases : VAMP727, ATVAMP727

Description : R-type VAMP7-group component of SNARE longin membrane fusion complex & original description: none


Gene families : OG0000720 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g02420

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00148060 ATVAMP725,... Vesicle trafficking.SNARE target membrane recognition... 0.05 OrthoFinder output from all 47 species
Adi_g009469 VAMP726, ATVAMP726 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Adi_g012928 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ala_g01359 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
GSVIVT01000524001 VAMP726, ATVAMP726 Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
GSVIVT01028579001 ATVAMP721,... Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Mp7g07410.1 ATVAMP721,... VAMP7-type R-type SNARE longin protein 0.03 OrthoFinder output from all 47 species
Solyc02g069150.3.1 ATVAMP721,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 OrthoFinder output from all 47 species
Zm00001e003924_P002 VAMP727,... VAMP7-type R-type SNARE longin protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR042855 V_SNARE_CC 145 231
IPR010908 Longin_dom 32 98
No external refs found!