Dcu_g01964 (PWP2, ATPWP2)

Aliases : PWP2, ATPWP2

Description : SSU processome assembly factor *(UTP1/PWP2) & original description: none

Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g01964

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00059990	PWP2, ATPWP2,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT1G15440	PWP2, ATPWP2	periodic tryptophan protein 2	0.04	OrthoFinder output from all 47 species
Aev_g07968	PWP2, ATPWP2	SSU processome assembly factor *(UTP1/PWP2) & original...	0.03	OrthoFinder output from all 47 species
Ala_g02565	PWP2, ATPWP2	SSU processome assembly factor *(UTP1/PWP2) & original...	0.06	OrthoFinder output from all 47 species
Aop_g09640	PWP2, ATPWP2	SSU processome assembly factor *(UTP1/PWP2) & original...	0.04	OrthoFinder output from all 47 species
Ceric.39G059700.1	PWP2, ATPWP2,...	SSU processome assembly factor *(UTP1/PWP2) & original...	0.06	OrthoFinder output from all 47 species
Cre06.g254150	PWP2, ATPWP2	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g10263	PWP2, ATPWP2	SSU processome assembly factor *(UTP1/PWP2) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01017243001	PWP2, ATPWP2	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_23048	PWP2, ATPWP2	SSU processome assembly factor (UTP1/PWP2)	0.04	OrthoFinder output from all 47 species
LOC_Os05g44320.1	PWP2, ATPWP2,...	SSU processome assembly factor (UTP1/PWP2)	0.04	OrthoFinder output from all 47 species
Mp1g17900.1	PWP2, ATPWP2	SSU processome assembly factor (UTP1/PWP2)	0.04	OrthoFinder output from all 47 species
Pp3c7_9990V3.1	PWP2, ATPWP2, Pp3c7_9990	periodic tryptophan protein 2	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014180	PWP2, ATPWP2	SSU processome assembly factor *(UTP1/PWP2) & original...	0.03	OrthoFinder output from all 47 species
Sam_g04525	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo80929	PWP2, ATPWP2	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Spa_g18868	PWP2, ATPWP2	SSU processome assembly factor *(UTP1/PWP2) & original...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	567	604
IPR001680	WD40_repeat	87	119
IPR001680	WD40_repeat	482	518
IPR001680	WD40_repeat	132	168
IPR001680	WD40_repeat	445	476
IPR001680	WD40_repeat	615	646
IPR007148	SSU_processome_Utp12	846	951

External Links

No external refs found!

Dcu_g01964 (PWP2, ATPWP2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation