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  5. Dcu_g01919

Dcu_g01919


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01919

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00041p00082900 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g25318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02224 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0027.g023581 No alias not classified & original description: CDS=1-2721 0.05 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.07 OrthoFinder output from all 47 species
Ceric.20G007500.1 Ceric.20G007500 not classified & original description: pacid=50566839... 0.04 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g10280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427644g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10436637g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g03804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g13061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g38066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g41246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007365_P001 Zm00001e007365 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e012880_P004 Zm00001e012880 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 390 455
IPR000504 RRM_dom 293 356
IPR000504 RRM_dom 213 282
No external refs found!