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Aliases : PPR596
Description : RNA editing factor *(POCO) & original description: none
Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Dcu_g01745 | |
| Cluster | HCCA: Cluster_57 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G02370 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT1G60770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g030656 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g07362 | No alias | RNA editing factor *(POCO) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g11741 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32967 | PPR596 | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g33654 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g02151 | No alias | RNA editing factor *(POCO) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g09907 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0032.g024834 | No alias | RNA editing factor *(POCO) & original description: CDS=106-2040 | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01002065001 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020534001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01031246001 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g17320.1 | PPR596, LOC_Os01g17320 | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g19490.1 | LOC_Os01g19490 | Pentatricopeptide repeat-containing protein At4g01990,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g55310.1 | LOC_Os02g55310 | Pentatricopeptide repeat-containing protein At5g27460... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os04g25410.1 | LOC_Os04g25410 | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g12140.1 | LOC_Os07g12140 | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g40750.1 | LOC_Os07g40750 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g35750.1 | LOC_Os10g35750 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g35760.2 | LOC_Os10g35760 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g17918 | No alias | RNA editing factor *(POCO) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| MA_100637g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | OrthoFinder output from all 47 species | |
| MA_29755g0010 | No alias | Pentatricopeptide repeat-containing protein At1g02150... | 0.02 | OrthoFinder output from all 47 species | |
| MA_492314g0010 | No alias | RNA editing factor (POCO) | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g06280 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g49768 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g02315 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29727 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo406783 | PPR596 | Pentatricopeptide repeat-containing protein At1g80270,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g079320.4.1 | Solyc01g079320 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g100580.3.1 | Solyc01g100580 | Pentatricopeptide repeat-containing protein At4g01990,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g078330.3.1 | Solyc02g078330 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g005140.3.1 | Solyc06g005140 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g063220.4.1 | Solyc07g063220 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g020050.2.1 | PPR596, Solyc12g020050 | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g11271 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g37476 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e025470_P001 | PPR596, Zm00001e025470 | RNA editing factor (POCO) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e026211_P002 | Zm00001e026211 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |