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  4. Sequence
  5. Dcu_g01694

Dcu_g01694


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01694

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.05 OrthoFinder output from all 47 species
AT1G02420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G73400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G74900 OTP43 Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06010 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Aev_g17218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01835 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12835 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Aob_g26096 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36532 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g58922 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.05 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.04 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Gb_05336 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.04 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
LOC_Os03g55340.1 LOC_Os03g55340 Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Lfl_g01806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 OrthoFinder output from all 47 species
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_9740107g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Nbi_g01378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17290 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007283 No alias not classified & original description: CDS=1-1626 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014467 No alias not classified & original description: CDS=1-2058 0.03 OrthoFinder output from all 47 species
Solyc01g097130.4.1 Solyc01g097130 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Solyc03g112560.4.1 Solyc03g112560 Pentatricopeptide repeat-containing protein At1g80550,... 0.06 OrthoFinder output from all 47 species
Solyc04g071280.3.1 Solyc04g071280 Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.02 OrthoFinder output from all 47 species
Solyc12g043100.2.1 Solyc12g043100 group-II intron mitochondrial splicing factor (MISF68) 0.05 OrthoFinder output from all 47 species
Spa_g10895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 384
IPR002885 Pentatricopeptide_repeat 230 278
IPR002885 Pentatricopeptide_repeat 507 554
IPR002885 Pentatricopeptide_repeat 467 495
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 402 433
IPR002885 Pentatricopeptide_repeat 165 193
IPR002885 Pentatricopeptide_repeat 199 224
No external refs found!