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  5. Dcu_g01379

Dcu_g01379


Description : translation elongation factor *(EF-Tu) & original description: none


Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01379
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT4G02930 No alias GTP binding Elongation factor Tu family protein 0.05 OrthoFinder output from all 47 species
Als_g10160 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Aop_g11193 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G051100.1 Ceric.33G051100 translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01011073001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63410.1 LOC_Os03g63410 EF-Tu translation elongation factor 0.07 OrthoFinder output from all 47 species
Len_g01241 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g01476 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
MA_58335g0010 No alias EF-Tu translation elongation factor 0.02 OrthoFinder output from all 47 species
Ore_g05800 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g53710 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Smo153081 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Solyc06g008940.4.1 Solyc06g008940 EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species
Solyc09g073000.3.1 Solyc09g073000 EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species
Spa_g01140 No alias translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Tin_g06040 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e006373_P001 Zm00001e006373 EF-Tu translation elongation factor 0.06 OrthoFinder output from all 47 species
Zm00001e011649_P001 Zm00001e011649 EF-Tu translation elongation factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 51 244
IPR004161 EFTu-like_2 268 338
IPR004160 Transl_elong_EFTu/EF1A_C 343 436
No external refs found!