AMTR_s00101p00099400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.76

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec13 scaffolding component


Gene families : OG_01_0002497 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002497_tree ,
OG_02_0002542 (LandPlants) Phylogenetic Tree(s): OG_02_0002542_tree ,
OG_03_0004509 (SeedPlants) Phylogenetic Tree(s): OG_03_0004509_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00099400
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g14280.1 No alias scaffolding component Sec13 of coat protein complex 0.04 Archaeplastida
Pp3c19_12500V3.1 No alias transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida
Pp3c22_20020V3.1 No alias transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Smo109958 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
Solyc03g120900.3.1 No alias scaffolding component Sec13 of coat protein complex 0.03 Archaeplastida
Zm00001e026053_P001 No alias scaffolding component Sec13 of coat protein complex 0.03 Archaeplastida
Zm00001e033208_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os07g14280.1 No alias scaffolding component Sec13 of coat protein complex 0.04 LandPlants
Pp3c19_12500V3.1 No alias transducin family protein / WD-40 repeat family protein 0.04 LandPlants
Smo109958 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 LandPlants
Solyc03g120900.3.1 No alias scaffolding component Sec13 of coat protein complex 0.03 LandPlants
Zm00001e026053_P001 No alias scaffolding component Sec13 of coat protein complex 0.03 LandPlants
Zm00001e033208_P004 No alias no hits & (original description: none) 0.03 LandPlants
AT3G01340 No alias Transducin/WD40 repeat-like superfamily protein 0.02 SeedPlants
MA_95078g0010 No alias scaffolding component Sec13 of coat protein complex 0.02 SeedPlants
Solyc03g120900.3.1 No alias scaffolding component Sec13 of coat protein complex 0.03 SeedPlants
Zm00001e016458_P001 No alias scaffolding component Sec13 of coat protein complex 0.02 SeedPlants
Zm00001e026053_P001 No alias scaffolding component Sec13 of coat protein complex 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 203 241
IPR001680 WD40_repeat 94 130
IPR001680 WD40_repeat 47 85
IPR001680 WD40_repeat 5 37
IPR001680 WD40_repeat 143 192
No external refs found!