Dcu_g01074 (OLI7, RPL5B)

Aliases : OLI7, RPL5B

Description : component *(uL18) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0002471 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002471_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g01074
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00162800	OLI5, RPL5A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT3G25520	OLI5, RPL5A, PGY3, ATL5	ribosomal protein L5	0.05	OrthoFinder output from all 47 species
AT5G39740	OLI7, RPL5B	ribosomal protein L5 B	0.06	OrthoFinder output from all 47 species
Aop_g23151	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0136.g050950	OLI7, RPL5B	not classified & original description: CDS=209-979	0.04	OrthoFinder output from all 47 species
Ceric.24G049300.1	OLI7, RPL5B,...	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.24G050100.1	OLI7, RPL5B,...	component *(uL18) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000194.49	OLI7, RPL5B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Cre14.g621450	OLI7, RPL5B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dcu_g34942	OLI5, RPL5A, PGY3, ATL5	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01001906001	No alias	60S ribosomal protein L5 OS=Cucumis sativus	0.04	OrthoFinder output from all 47 species
GSVIVT01038188001	OLI7, RPL5B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os01g67134.1	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Lfl_g10267	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_70965g0010	OLI7, RPL5B	component RPL5 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Mp4g15800.1	OLI7, RPL5B	component RPL5 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Pp3c1_7160V3.1	OLI7, RPL5B, Pp3c1_7160	ribosomal protein L5 B	0.02	OrthoFinder output from all 47 species
Pp3c7_25660V3.1	OLI7, RPL5B, Pp3c7_25660	ribosomal protein L5 B	0.04	OrthoFinder output from all 47 species
Sam_g12335	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g20151	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g20152	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo144921	OLI5, RPL5A, PGY3, ATL5	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc06g007670.4.1	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Solyc06g082870.4.1	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc09g020130.3.1	OLI7, RPL5B,...	component RPL5 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g05892	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g15116	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g53510	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e000256_P001	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e018972_P001	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e028563_P004	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	14	175
IPR025607	Rbsml_L5e_C	235	288

External Links

No external refs found!

Dcu_g01074 (OLI7, RPL5B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation