Pp3c18_14270V3.1


Description : winged-helix DNA-binding transcription factor family protein


Gene families : OG_01_0000491 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000491_tree ,
OG_02_0000417 (LandPlants) Phylogenetic Tree(s): OG_02_0000417_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_14270V3.1
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.71 No alias No description available 0.05 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.02 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.11 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.02 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.02 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.02 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.03 Archaeplastida
MA_10436125g0010 No alias linker histone (H1) 0.02 Archaeplastida
MA_5293931g0010 No alias No annotation 0.04 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.02 Archaeplastida
MA_6251451g0010 No alias No annotation 0.02 Archaeplastida
MA_877599g0010 No alias linker histone (H1) 0.04 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.04 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.02 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.02 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.02 LandPlants
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.09 LandPlants
Gb_21889 No alias linker histone (H1) 0.01 LandPlants
LOC_Os04g18090.1 No alias linker histone (H1) 0.02 LandPlants
MA_102457g0010 No alias linker histone (H1) 0.03 LandPlants
MA_10436125g0010 No alias linker histone (H1) 0.02 LandPlants
MA_500183g0010 No alias linker histone (H1) 0.02 LandPlants
MA_877599g0010 No alias linker histone (H1) 0.04 LandPlants
Solyc09g083380.4.1 No alias linker histone (H1) 0.02 LandPlants
Zm00001e007189_P001 No alias linker histone (H1) 0.02 LandPlants
Zm00001e011859_P001 No alias linker histone (H1) 0.02 LandPlants

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 68 135
No external refs found!