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  5. Spa_g56443

Spa_g56443


Description : component *(SF3B2) of splicing factor 3B complex & original description: none


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56443

Target Alias Description ECC score Gene Family Method Actions
Ala_g23643 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Als_g17641 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Aob_g04313 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Aop_g29274 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Ceric.30G024400.1 Ceric.30G024400 component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Lfl_g38051 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
MA_88936g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Msp_g32567 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Ore_g43719 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Sam_g19730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g006520.3.1 Solyc03g006520 component SF3B2 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Zm00001e013359_P002 Zm00001e013359 component SF3B2 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR007180 DUF382 176 301
IPR006568 PSP_pro-rich 310 354
No external refs found!