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  5. Spa_g56303

Spa_g56303


Description : tRNA cytidine-methyltransferase *(TRM140) & original description: none


Gene families : OG0004456 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004456_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56303
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Aob_g15874 No alias tRNA cytidine-methyltransferase *(TRM140) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os03g04940.1 LOC_Os03g04940 tRNA cytidine-methyltransferase (TRM140) 0.03 OrthoFinder output from all 47 species
Nbi_g31255 No alias tRNA cytidine-methyltransferase *(TRM140) & original... 0.02 OrthoFinder output from all 47 species
Pir_g09680 No alias tRNA cytidine-methyltransferase *(TRM140) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019410 Methyltransf_16 329 485
IPR013217 Methyltransf_12 80 181
No external refs found!