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  5. Spa_g56288

Spa_g56288 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56288
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00179p00033790 AT PRP39-2,... No description available 0.04 OrthoFinder output from all 47 species
Adi_g018948 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019406 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g37742 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25483 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.04G096600.1 PRP39, Ceric.04G096600 pre-mRNA-processing protein *(PRP39) & original... 0.04 OrthoFinder output from all 47 species
Cre16.g670300 PRP39 No description available 0.01 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g11777 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09806 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028422001 PRP39 No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01028423001 PRP39 No description available 0.04 OrthoFinder output from all 47 species
Gb_23802 PRP39 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
LOC_Os03g11200.1 PRP39, LOC_Os03g11200 pre-mRNA-processing protein (PRP39) 0.05 OrthoFinder output from all 47 species
Len_g23571 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Mp6g00560.1 PRP39 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
Msp_g38712 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g06717 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g21848 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g29159 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001814 PRP39 pre-mRNA-processing protein *(PRP39) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005318 PRP39 pre-mRNA-processing protein *(PRP39) & original... 0.04 OrthoFinder output from all 47 species
Sam_g11835 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19871 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!